Лаборатория молекулярной генетики микроорганизмов

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Thermus phage Lalka27b

Хозяин
Thermus thermophilus HB27c
Морфотип
myovirus
Жизненный цикл
lytic
Тип генома
dsDNA
Длина генома, п.н.
69 092
GC-состав, %
70.6
Место выделения
Valentina hot springs, Kunashir Island
Accession
PQ109077.1

Карта генома

Lalka27b69 092 п.н. · 80 открытых рамок считывания

CRISPR-кассета — 54 065..54 434 · 370 п.н. · консенсус повтора: GTTYYYCCCGTGCGCGCATGGAGGCACCGLexA-like regulator — 1..615 (+) · 615 п.н.Ulx-like anti-restriction protein — 605..982 (−) · 378 п.н.DarB-like anti-restriction protein — 975..7 235 (−) · 6 261 п.н.ssDNA binding protein — 7 361..8 083 (+) · 723 п.н.hypothetical protein — 8 273..9 556 (−) · 1 284 п.н.hypothetical protein — 9 659..9 907 (+) · 249 п.н.hypothetical protein — 9 913..10 584 (+) · 672 п.н.hypothetical protein — 10 622..11 395 (−) · 774 п.н.hypothetical protein — 11 406..11 834 (−) · 429 п.н.hypothetical protein — 11 831..12 460 (−) · 630 п.н.portal protein — 12 512..14 275 (+) · 1 764 п.н.minor head protein — 14 262..15 212 (+) · 951 п.н.vWA domain-containing protein — 15 276..16 256 (+) · 981 п.н.hypothetical protein — 16 253..17 599 (+) · 1 347 п.н.AAA family ATPase — 17 596..19 494 (+) · 1 899 п.н.hypothetical protein — 19 497..19 655 (+) · 159 п.н.hypothetical protein — 19 688..19 912 (+) · 225 п.н.TerL — 19 977..22 001 (+) · 2 025 п.н.hypothetical protein — 21 998..22 606 (−) · 609 п.н.hypothetical protein — 22 603..22 953 (−) · 351 п.н.dNMP kinase — 22 934..23 743 (−) · 810 п.н.nucleotidase — 23 736..24 368 (−) · 633 п.н.exonuclease — 24 355..25 626 (−) · 1 272 п.н.hypothetical protein — 25 766..26 080 (−) · 315 п.н.hypothetical protein — 26 080..26 499 (−) · 420 п.н.hypothetical protein — 26 562..26 822 (−) · 261 п.н.hypothetical protein — 26 843..27 058 (−) · 216 п.н.M23 family peptidase — 27 061..27 714 (−) · 654 п.н.hypothetical protein — 27 724..28 173 (−) · 450 п.н.hypothetical protein — 28 396..28 812 (−) · 417 п.н.hypothetical protein — 28 821..29 882 (−) · 1 062 п.н.hypothetical protein — 29 886..30 272 (−) · 387 п.н.hypothetical protein — 30 298..31 584 (−) · 1 287 п.н.baseplate wedge subunit — 31 584..32 642 (−) · 1 059 п.н.baseplate protein — 32 639..32 998 (−) · 360 п.н.hypothetical protein — 33 000..33 566 (−) · 567 п.н.hypothetical protein — 33 559..34 185 (−) · 627 п.н.hypothetical protein — 34 211..34 474 (−) · 264 п.н.putative zinc metallopeptidase — 34 474..34 911 (−) · 438 п.н.baseplate protein — 34 942..35 718 (−) · 777 п.н.hypothetical protein — 35 715..35 927 (−) · 213 п.н.putative helicase — 35 917..41 064 (−) · 5 148 п.н.tail protein — 41 128..42 510 (−) · 1 383 п.н.M23 family peptidase — 42 511..45 180 (−) · 2 670 п.н.hypothetical protein — 45 165..45 419 (−) · 255 п.н.tail assembly chaperone — 45 385..45 801 (−) · 417 п.н.virion structural protein — 45 872..46 333 (−) · 462 п.н.tail sheath — 46 347..48 086 (−) · 1 740 п.н.hypothetical protein — 48 100..48 309 (−) · 210 п.н.structural protein — 48 347..49 219 (−) · 873 п.н.hypothetical protein — 49 229..50 113 (−) · 885 п.н.hypothetical protein — 50 110..51 015 (−) · 906 п.н.tail fiber protein — 51 016..51 819 (−) · 804 п.н.yqbF-like protein — 51 849..52 253 (−) · 405 п.н.Cas12r1 — 52 355..54 049 (+) · 1 695 п.н.DNMTb — 54 517..55 362 (+) · 846 п.н.hypothetical protein — 55 353..55 544 (+) · 192 п.н.MCP — 55 572..57 080 (−) · 1 509 п.н.hypothetical protein — 57 077..57 724 (−) · 648 п.н.hypothetical protein — 57 738..58 658 (−) · 921 п.н.recombinase — 58 697..59 614 (+) · 918 п.н.hypothetical protein — 59 971..60 339 (−) · 369 п.н.DNMT — 60 294..61 136 (−) · 843 п.н.hypothetical protein — 61 123..61 317 (−) · 195 п.н.hypothetical protein — 61 283..61 552 (−) · 270 п.н.primase — 61 549..62 172 (−) · 624 п.н.DnaB-like replicative helicase — 62 160..63 455 (−) · 1 296 п.н.replication initiation O-like protein — 63 445..64 380 (−) · 936 п.н.hypothetical protein — 64 380..64 511 (−) · 132 п.н.hypothetical protein — 64 628..64 720 (+) · 93 п.н.DNA polymerase processivity factor — 64 826..65 881 (−) · 1 056 п.н.hypothetical protein — 65 956..66 210 (−) · 255 п.н.RecT-like ssDNA annealing protein — 66 222..67 004 (−) · 783 п.н.hypothetical protein — 67 030..67 209 (−) · 180 п.н.hypothetical protein — 67 206..67 529 (−) · 324 п.н.hypothetical protein — 67 550..67 732 (−) · 183 п.н.hypothetical protein — 67 729..67 992 (−) · 264 п.н.hypothetical protein — 67 985..68 134 (−) · 150 п.н.hypothetical protein — 68 127..68 552 (−) · 426 п.н.transcriptional regulator — 68 574..68 870 (−) · 297 п.н.

Последовательности

ФайлВидВерсияРазмер
Lalka27b_genome.gb.gzаннотация44 KB

Описание

One of the CRISPR-Cas encoding Lalka phages. See the Lalka27a record for details.

Примечания

Other closely related Lalka phages:

Lalka8

Lalka27a

Lalka27c

Lalka27d

Связанные публикации

  1. A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses

    Anna B. Trofimova et al.

    bioRxiv (preprint)2026

  2. New Viruses Infecting Hyperthermophilic Bacterium Thermus thermophilus

    Matvey Kolesnik et al.

    Viruses2024

Проекты