Лаборатория молекулярной генетики микроорганизмов

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Thermus phage Lalka8

Вирионы фага Lalka8 с везикуламиВирионы фага Lalka8 с везикулами
Credentials: Olga Sokolova, Denis Moiseenko
Хозяин
Thermus thermophilus HB8
Морфотип
myovirus
Жизненный цикл
lysogenic
Тип генома
dsDNA
Длина генома, п.н.
72 273
GC-состав, %
70.6
Место выделения
Valentina hot springs, Kunashir Island
Accession
PQ109075.1

Карта генома

Lalka872 273 п.н. · 84 открытые рамки считывания

CRISPR-кассета — 54 281..54 741 · 461 п.н. · консенсус повтора: GTTYYYCCCGTGCGCGCATGGAGGCACCGUlx-like anti-restriction protein — 1..378 (−) · 378 п.н.DarB-like anti-restriction protein — 371..6 634 (−) · 6 264 п.н.ssDNA binding protein — 6 760..7 482 (+) · 723 п.н.hypothetical protein — 7 672..8 955 (−) · 1 284 п.н.hypothetical protein — 9 058..9 306 (+) · 249 п.н.hypothetical protein — 9 312..9 983 (+) · 672 п.н.hypothetical protein — 10 021..10 794 (−) · 774 п.н.hypothetical protein — 10 805..11 233 (−) · 429 п.н.hypothetical protein — 11 230..11 859 (−) · 630 п.н.portal protein — 11 911..13 674 (+) · 1 764 п.н.minor head protein — 13 661..14 611 (+) · 951 п.н.vWA domain-containing protein — 14 675..15 658 (+) · 984 п.н.hypothetical protein — 15 655..16 995 (+) · 1 341 п.н.AAA family ATPase — 16 992..18 890 (+) · 1 899 п.н.hypothetical protein — 18 893..19 051 (+) · 159 п.н.hypothetical protein — 19 084..19 308 (+) · 225 п.н.TerL — 19 373..21 394 (+) · 2 022 п.н.hypothetical protein — 21 391..21 999 (−) · 609 п.н.RNA ligase — 21 996..23 159 (−) · 1 164 п.н.dNMP kinase — 23 101..23 907 (−) · 807 п.н.nucleotidase — 23 900..24 532 (−) · 633 п.н.exonuclease — 24 519..25 790 (−) · 1 272 п.н.hypothetical protein — 25 930..26 244 (−) · 315 п.н.hypothetical protein — 26 244..26 663 (−) · 420 п.н.hypothetical protein — 26 726..26 986 (−) · 261 п.н.hypothetical protein — 27 007..27 222 (−) · 216 п.н.M23 family peptidase — 27 225..27 878 (−) · 654 п.н.hypothetical protein — 27 888..28 337 (−) · 450 п.н.tail fiber assembly — 28 494..28 754 (−) · 261 п.н.hypothetical protein — 28 747..29 067 (−) · 321 п.н.tail fiber protein — 29 067..30 083 (−) · 1 017 п.н.hypothetical protein — 30 085..30 471 (−) · 387 п.н.hypothetical protein — 30 502..31 788 (−) · 1 287 п.н.baseplate wedge subunit — 31 789..32 850 (−) · 1 062 п.н.baseplate protein — 32 847..33 206 (−) · 360 п.н.hypothetical protein — 33 210..33 779 (−) · 570 п.н.hypothetical protein — 33 772..34 398 (−) · 627 п.н.hypothetical protein — 34 424..34 687 (−) · 264 п.н.putative zinc metallopeptidase — 34 687..35 124 (−) · 438 п.н.baseplate protein — 35 155..35 931 (−) · 777 п.н.hypothetical protein — 35 928..36 143 (−) · 216 п.н.putative helicase — 36 133..41 280 (−) · 5 148 п.н.tail protein — 41 344..42 726 (−) · 1 383 п.н.M23 family peptidase — 42 727..45 396 (−) · 2 670 п.н.hypothetical protein — 45 381..45 635 (−) · 255 п.н.tail assembly chaperone — 45 601..46 017 (−) · 417 п.н.virion structural protein — 46 088..46 549 (−) · 462 п.н.tail sheath — 46 563..48 302 (−) · 1 740 п.н.hypothetical protein — 48 316..48 525 (−) · 210 п.н.structural protein — 48 563..49 435 (−) · 873 п.н.hypothetical protein — 49 445..50 329 (−) · 885 п.н.hypothetical protein — 50 326..51 072 (−) · 747 п.н.tail fiber protein — 51 232..52 035 (−) · 804 п.н.yqbF-like protein — 52 065..52 469 (−) · 405 п.н.TnpB-family transposase — 52 571..54 265 (+) · 1 695 п.н.MCP — 54 857..56 365 (−) · 1 509 п.н.hypothetical protein — 56 362..57 009 (−) · 648 п.н.hypothetical protein — 57 023..57 943 (−) · 921 п.н.recombinase — 57 982..58 902 (+) · 921 п.н.hypothetical protein — 58 932..59 141 (−) · 210 п.н.hypothetical protein — 59 260..59 628 (−) · 369 п.н.DNMT — 59 583..60 425 (−) · 843 п.н.hypothetical protein — 60 412..60 606 (−) · 195 п.н.hypothetical protein — 60 572..60 841 (−) · 270 п.н.primase — 60 838..61 461 (−) · 624 п.н.DnaB-like replicative helicase — 61 449..62 744 (−) · 1 296 п.н.replication initiation O-like protein — 62 734..63 669 (−) · 936 п.н.hypothetical protein — 63 669..63 800 (−) · 132 п.н.hypothetical protein — 63 917..64 009 (+) · 93 п.н.DNA polymerase processivity factor — 64 115..65 182 (−) · 1 068 п.н.hypothetical protein — 65 257..65 511 (−) · 255 п.н.RecT-like ssDNA annealing protein — 65 523..66 308 (−) · 786 п.н.hypothetical protein — 66 311..66 538 (−) · 228 п.н.hypothetical protein — 66 531..67 019 (−) · 489 п.н.hypothetical protein — 67 016..67 339 (−) · 324 п.н.hypothetical protein — 67 360..67 542 (−) · 183 п.н.hypothetical protein — 67 539..67 820 (−) · 282 п.н.hypothetical protein — 67 817..67 972 (−) · 156 п.н.hypothetical protein — 67 965..68 588 (−) · 624 п.н.hypothetical protein — 68 581..69 006 (−) · 426 п.н.transcriptional regulator — 69 028..69 432 (−) · 405 п.н.LexA-like regulator — 69 547..70 227 (+) · 681 п.н.hypothetical protein — 70 229..70 882 (+) · 654 п.н.integrase — 70 882..72 072 (+) · 1 191 п.н.

Последовательности

ФайлВидВерсияРазмер
Lalka8_genome.gb.gzаннотация48 KB

Описание

One of the CRISPR-Cas encoding Lalka phages. See the Lalka27a record for details.

Связанные публикации

  1. A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses

    Anna B. Trofimova et al.

    bioRxiv (preprint)2026

  2. New Viruses Infecting Hyperthermophilic Bacterium Thermus thermophilus

    Matvey Kolesnik et al.

    Viruses2024

Проекты