Лаборатория молекулярной генетики микроорганизмов

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Thermus phage Lalka27d

Хозяин
Thermus thermophilus HB27c
Морфотип
myovirus
Жизненный цикл
lysogenic
Тип генома
dsDNA
Длина генома, п.н.
71 011
GC-состав, %
70.6
Место выделения
Valentina hot springs, Kunashir Island
Accession
PZ295454.1
Ответственный
Александр Дмитриев

Карта генома

Lalka27d71 011 п.н. · 83 открытые рамки считывания

CRISPR-кассета — 53 501..53 651 · 151 п.н. · консенсус повтора: gtttctcccgtgcgcgcatggaggcaccgUlx-like anti-restriction protein — 27..404 (−) · 378 п.н.DarB-like anti-restriction protein — 397..6 621 (−) · 6 225 п.н.ssDNA binding protein — 6 747..7 469 (+) · 723 п.н.hypothetical protein — 7 659..8 933 (−) · 1 275 п.н.hypothetical protein — 9 036..9 284 (+) · 249 п.н.hypothetical protein — 9 290..9 961 (+) · 672 п.н.hypothetical protein — 9 999..10 772 (−) · 774 п.н.hypothetical protein — 10 783..11 211 (−) · 429 п.н.hypothetical protein — 11 208..11 837 (−) · 630 п.н.portal protein — 11 889..13 652 (+) · 1 764 п.н.minor head protein — 13 639..14 589 (+) · 951 п.н.vWA domain-containing protein — 14 653..15 633 (+) · 981 п.н.SpoVR like protein — 15 630..16 976 (+) · 1 347 п.н.AAA family ATPase — 16 973..18 871 (+) · 1 899 п.н.hypothetical protein — 18 874..19 032 (+) · 159 п.н.hypothetical protein — 19 065..19 289 (+) · 225 п.н.TerL — 19 354..21 378 (+) · 2 025 п.н.hypothetical protein — 21 375..21 983 (−) · 609 п.н.hypothetical protein — 21 980..22 369 (−) · 390 п.н.dNMP kinase — 22 311..23 117 (−) · 807 п.н.nucleotidase — 23 110..23 745 (−) · 636 п.н.exonuclease — 23 729..24 991 (−) · 1 263 п.н.hypothetical protein — 25 131..25 445 (−) · 315 п.н.hypothetical protein — 25 445..25 864 (−) · 420 п.н.hypothetical protein — 25 927..26 187 (−) · 261 п.н.hypothetical protein — 26 208..26 423 (−) · 216 п.н.M23 family peptidase — 26 426..27 079 (−) · 654 п.н.Bacteriophage holin family protein — 27 089..27 538 (−) · 450 п.н.hypothetical protein — 27 832..28 248 (−) · 417 п.н.hypothetical protein — 28 257..29 318 (−) · 1 062 п.н.hypothetical protein — 29 322..29 708 (−) · 387 п.н.hypothetical protein — 29 734..31 020 (−) · 1 287 п.н.baseplate wedge subunit — 31 020..32 078 (−) · 1 059 п.н.baseplate protein — 32 075..32 434 (−) · 360 п.н.hypothetical protein — 32 436..33 002 (−) · 567 п.н.hypothetical protein — 32 995..33 621 (−) · 627 п.н.putative deoxyribonuclease RhsB — 33 647..33 910 (−) · 264 п.н.putative zinc metallopeptidase — 33 910..34 347 (−) · 438 п.н.baseplate protein — 34 378..35 154 (−) · 777 п.н.hypothetical protein — 35 151..35 363 (−) · 213 п.н.putative helicase — 35 353..40 500 (−) · 5 148 п.н.tail protein — 40 564..41 946 (−) · 1 383 п.н.M23 family peptidase — 41 947..44 616 (−) · 2 670 п.н.hypothetical protein — 44 601..44 855 (−) · 255 п.н.tail assembly chaperone — 44 821..45 237 (−) · 417 п.н.virion structural protein — 45 308..45 769 (−) · 462 п.н.tail sheath — 45 783..47 522 (−) · 1 740 п.н.hypothetical protein — 47 536..47 745 (−) · 210 п.н.structural protein — 47 783..48 655 (−) · 873 п.н.hypothetical protein — 48 665..49 549 (−) · 885 п.н.hypothetical protein — 49 546..50 451 (−) · 906 п.н.tail fiber protein — 50 452..51 255 (−) · 804 п.н.yqbF-like protein — 51 285..51 689 (−) · 405 п.н.Cas12r1 — 51 791..53 485 (+) · 1 695 п.н.hypothetical protein — 53 734..54 579 (+) · 846 п.н.hypothetical protein — 54 570..54 761 (+) · 192 п.н.hypothetical protein — 54 789..56 297 (−) · 1 509 п.н.hypothetical protein — 56 294..56 941 (−) · 648 п.н.hypothetical protein — 56 955..57 875 (−) · 921 п.н.recombinase — 57 914..58 831 (+) · 918 п.н.hypothetical protein — 58 861..59 070 (−) · 210 п.н.hypothetical protein — 59 189..59 557 (−) · 369 п.н.hypothetical protein — 59 512..60 354 (−) · 843 п.н.hypothetical protein — 60 341..60 535 (−) · 195 п.н.hypothetical protein — 60 501..60 770 (−) · 270 п.н.primase — 60 767..61 390 (−) · 624 п.н.DnaB-like replicative helicase — 61 378..62 673 (−) · 1 296 п.н.replication initiation O-like protein — 62 663..63 598 (−) · 936 п.н.hypothetical protein — 63 598..63 729 (−) · 132 п.н.hypothetical protein — 63 846..63 938 (+) · 93 п.н.DNA polymerase processivity factor — 64 044..65 099 (−) · 1 056 п.н.hypothetical protein — 65 174..65 428 (−) · 255 п.н.RecT-like ssDNA annealing protein — 65 440..66 222 (−) · 783 п.н.hypothetical protein — 66 248..66 427 (−) · 180 п.н.hypothetical protein — 66 424..66 747 (−) · 324 п.н.hypothetical protein — 66 768..66 950 (−) · 183 п.н.hypothetical protein — 66 947..67 210 (−) · 264 п.н.hypothetical protein — 67 203..67 352 (−) · 150 п.н.hypothetical protein — 67 345..67 770 (−) · 426 п.н.transcriptional regulator — 67 792..68 196 (−) · 405 п.н.LexA-like regulator — 68 657..68 992 (+) · 336 п.н.hypothetical protein — 68 994..69 647 (+) · 654 п.н.integrase — 69 647..70 837 (+) · 1 191 п.н.

Последовательности

ФайлВидВерсияРазмер
Lalka27d_genome.gb.gzаннотация46 KB

Описание

One of the CRISPR-Cas encoding Lalka phages. See the Lalka27a record for details.

Связанные публикации

  1. A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses

    Anna B. Trofimova et al.

    bioRxiv (preprint)2026

Проекты