Лаборатория молекулярной генетики микроорганизмов

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Thermus phage Lalka27c

Хозяин
Thermus thermophilus HB27c
Морфотип
myovirus
Жизненный цикл
lysogenic
Тип генома
dsDNA
Длина генома, п.н.
71 157
GC-состав, %
70.6
Место выделения
Valentina hot springs, Kunashir Island
Accession
PZ295453.1
Ответственный
Александр Дмитриев

Карта генома

Lalka27c71 157 п.н. · 83 открытые рамки считывания

CRISPR-кассета — 53 549..53 795 · 247 п.н. · консенсус повтора: gtttctcccgtgcgcgcatggaggcaccgUlx-like anti-restriction protein — 27..404 (−) · 378 п.н.DarB-like anti-restriction protein — 397..6 660 (−) · 6 264 п.н.ssDNA binding protein — 6 786..7 508 (+) · 723 п.н.hypothetical protein — 7 698..8 981 (−) · 1 284 п.н.hypothetical protein — 9 084..9 332 (+) · 249 п.н.hypothetical protein — 9 338..10 009 (+) · 672 п.н.hypothetical protein — 10 047..10 820 (−) · 774 п.н.hypothetical protein — 10 831..11 259 (−) · 429 п.н.hypothetical protein — 11 256..11 885 (−) · 630 п.н.portal protein — 11 937..13 700 (+) · 1 764 п.н.minor head protein — 13 687..14 637 (+) · 951 п.н.vWA domain-containing protein — 14 701..15 681 (+) · 981 п.н.SpoVR like protein — 15 678..17 024 (+) · 1 347 п.н.AAA family ATPase — 17 021..18 919 (+) · 1 899 п.н.hypothetical protein — 18 922..19 080 (+) · 159 п.н.hypothetical protein — 19 113..19 337 (+) · 225 п.н.TerL — 19 402..21 423 (+) · 2 022 п.н.hypothetical protein — 21 420..22 028 (−) · 609 п.н.hypothetical protein — 22 025..22 375 (−) · 351 п.н.dNMP kinase — 22 356..23 165 (−) · 810 п.н.nucleotidase — 23 158..23 793 (−) · 636 п.н.exonuclease — 23 777..25 039 (−) · 1 263 п.н.hypothetical protein — 25 179..25 493 (−) · 315 п.н.hypothetical protein — 25 493..25 912 (−) · 420 п.н.hypothetical protein — 25 975..26 235 (−) · 261 п.н.hypothetical protein — 26 256..26 471 (−) · 216 п.н.M23 family peptidase — 26 474..27 127 (−) · 654 п.н.Bacteriophage holin family protein — 27 137..27 586 (−) · 450 п.н.hypothetical protein — 27 880..28 296 (−) · 417 п.н.hypothetical protein — 28 305..29 366 (−) · 1 062 п.н.hypothetical protein — 29 370..29 756 (−) · 387 п.н.hypothetical protein — 29 782..31 068 (−) · 1 287 п.н.baseplate wedge subunit — 31 068..32 126 (−) · 1 059 п.н.baseplate protein — 32 123..32 482 (−) · 360 п.н.hypothetical protein — 32 484..33 050 (−) · 567 п.н.hypothetical protein — 33 043..33 669 (−) · 627 п.н.putative deoxyribonuclease RhsB — 33 695..33 958 (−) · 264 п.н.putative zinc metallopeptidase — 33 958..34 395 (−) · 438 п.н.baseplate protein — 34 426..35 202 (−) · 777 п.н.hypothetical protein — 35 199..35 411 (−) · 213 п.н.putative helicase — 35 401..40 548 (−) · 5 148 п.н.tail protein — 40 612..41 994 (−) · 1 383 п.н.M23 family peptidase — 41 995..44 664 (−) · 2 670 п.н.hypothetical protein — 44 649..44 903 (−) · 255 п.н.tail assembly chaperone — 44 869..45 285 (−) · 417 п.н.virion structural protein — 45 356..45 817 (−) · 462 п.н.tail sheath — 45 831..47 570 (−) · 1 740 п.н.hypothetical protein — 47 584..47 793 (−) · 210 п.н.structural protein — 47 831..48 703 (−) · 873 п.н.hypothetical protein — 48 713..49 597 (−) · 885 п.н.hypothetical protein — 49 594..50 499 (−) · 906 п.н.tail fiber protein — 50 500..51 303 (−) · 804 п.н.yqbF-like protein — 51 333..51 737 (−) · 405 п.н.Cas12r1 — 51 839..53 533 (+) · 1 695 п.н.hypothetical protein — 53 878..54 723 (+) · 846 п.н.hypothetical protein — 54 714..54 905 (+) · 192 п.н.hypothetical protein — 54 933..56 441 (−) · 1 509 п.н.hypothetical protein — 56 438..57 085 (−) · 648 п.н.hypothetical protein — 57 099..58 019 (−) · 921 п.н.recombinase — 58 058..58 975 (+) · 918 п.н.hypothetical protein — 59 005..59 214 (−) · 210 п.н.hypothetical protein — 59 333..59 701 (−) · 369 п.н.hypothetical protein — 59 656..60 498 (−) · 843 п.н.hypothetical protein — 60 485..60 679 (−) · 195 п.н.hypothetical protein — 60 645..60 914 (−) · 270 п.н.primase — 60 911..61 534 (−) · 624 п.н.DnaB-like replicative helicase — 61 522..62 820 (−) · 1 299 п.н.replication initiation O-like protein — 62 810..63 745 (−) · 936 п.н.hypothetical protein — 63 745..63 876 (−) · 132 п.н.hypothetical protein — 63 993..64 085 (+) · 93 п.н.DNA polymerase processivity factor — 64 191..65 246 (−) · 1 056 п.н.hypothetical protein — 65 321..65 575 (−) · 255 п.н.RecT-like ssDNA annealing protein — 65 587..66 369 (−) · 783 п.н.hypothetical protein — 66 395..66 574 (−) · 180 п.н.hypothetical protein — 66 571..66 894 (−) · 324 п.н.hypothetical protein — 66 915..67 097 (−) · 183 п.н.hypothetical protein — 67 094..67 357 (−) · 264 п.н.hypothetical protein — 67 350..67 499 (−) · 150 п.н.hypothetical protein — 67 492..67 917 (−) · 426 п.н.transcriptional regulator — 67 939..68 343 (−) · 405 п.н.LexA-like regulator — 68 458..69 138 (+) · 681 п.н.hypothetical protein — 69 140..69 793 (+) · 654 п.н.integrase — 69 793..70 983 (+) · 1 191 п.н.

Последовательности

ФайлВидВерсияРазмер
Lalka27c_genome.gb.gzаннотация46 KB

Описание

One of the CRISPR-Cas encoding Lalka phages. See the Lalka27a record for details.

Связанные публикации

  1. A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses

    Anna B. Trofimova et al.

    bioRxiv (preprint)2026

Проекты