Laboratory of Molecular Genetics of Microorganisms

All bacteriophages

Thermus phage Cumys

Host
Thermus thermophilus HB8
Morphotype
myovirus
Lifecycle
lysogenic
Genome type
dsDNA
Genome length, bp
50 223
GC content, %
67.9
Isolation source
Valentina hot springs, Kunashir Island
Accession
PQ109079.1

Genome map

Cumys50 223 bp · 60 coding sequences

portal protein — 227..1 906 (+) · 1 680 bpminor head protein — 1 909..2 925 (+) · 1 017 bphypothetical protein — 2 922..4 640 (+) · 1 719 bphypothetical protein — 4 630..5 055 (+) · 426 bpTerL — 5 052..7 070 (+) · 2 019 bphemolysin-like protein — 7 067..7 417 (−) · 351 bphypothetical protein — 7 408..7 698 (−) · 291 bphypothetical protein — 7 643..8 005 (−) · 363 bpM23 family peptidase — 8 002..8 667 (−) · 666 bphypothetical protein — 8 757..9 407 (+) · 651 bpDUF483-domain protein — 9 446..10 384 (−) · 939 bprSAM protein — 10 386..11 636 (−) · 1 251 bphypothetical protein — 11 645..12 676 (−) · 1 032 bphypothetical protein — 12 686..12 979 (−) · 294 bptail collar fiber protein — 12 972..13 361 (−) · 390 bpbaseplate protein — 13 388..14 197 (−) · 810 bpbaseplate wedge subunit — 14 198..15 256 (−) · 1 059 bpbaseplate protein — 15 253..15 573 (−) · 321 bphypothetical protein — 15 693..15 830 (−) · 138 bphypothetical protein — 15 868..17 133 (−) · 1 266 bptip protein — 17 160..17 450 (−) · 291 bpbaseplate protein — 17 535..18 536 (−) · 1 002 bptape measure protein and peptidase — 18 546..19 997 (−) · 1 452 bpputative lipoprotein — 20 012..20 578 (+) · 567 bpM23 family peptidase — 20 575..22 998 (−) · 2 424 bphypothetical protein — 22 979..23 467 (+) · 489 bphypothetical protein — 23 464..23 805 (−) · 342 bpvirion structural protein — 24 160..24 597 (−) · 438 bptail sheath — 24 609..26 363 (−) · 1 755 bphypothetical protein — 26 357..26 566 (−) · 210 bphypothetical protein — 26 593..27 009 (−) · 417 bphypothetical protein — 27 020..28 783 (−) · 1 764 bphypothetical protein — 28 785..29 006 (−) · 222 bptail protein — 29 033..29 893 (−) · 861 bphypothetical protein — 29 890..30 744 (−) · 855 bpvirion structural protein — 30 748..31 668 (−) · 921 bptail fiber protein — 31 665..32 456 (−) · 792 bphypothetical protein — 32 459..32 902 (−) · 444 bpMCP — 33 000..34 490 (−) · 1 491 bphypothetical protein — 34 502..35 182 (−) · 681 bphead maturation protease — 35 179..36 144 (−) · 966 bphypothetical protein — 36 171..36 413 (−) · 243 bpputative helicase — 36 422..41 275 (−) · 4 854 bphypothetical protein — 41 302..42 054 (−) · 753 bphypothetical protein — 42 080..42 619 (−) · 540 bphypothetical protein — 42 807..42 938 (−) · 132 bpDNMT — 42 949..43 764 (−) · 816 bphypothetical protein — 43 724..43 846 (−) · 123 bphypothetical protein — 43 914..44 294 (−) · 381 bpreplication initiation protein — 44 298..45 341 (−) · 1 044 bphypothetical protein — 45 328..45 528 (−) · 201 bpRecT-like ssDNA annealing protein — 45 587..46 405 (−) · 819 bphypothetical protein — 46 414..46 596 (−) · 183 bphypothetical protein — 46 600..46 947 (−) · 348 bphypothetical protein — 47 084..47 227 (−) · 144 bphypothetical protein — 47 224..47 409 (−) · 186 bpexcisionase and transcriptional regulator — 47 541..47 822 (−) · 282 bptranscriptional regulator — 47 864..48 103 (−) · 240 bpLexA-like regulator — 48 191..48 892 (+) · 702 bpintegrase — 48 889..50 001 (+) · 1 113 bp

Sequences

FileKindVersionSize
Cumys_genome.gb.gzannotation34 KB

Description

Lysogenic phage that uses 3' segment of Ile-tRNA genes as its attachment site. This phage is very similar to phiMa phage (one of the notable differences - Cumys lacks darTG locus).

Related publications

  1. New Viruses Infecting Hyperthermophilic Bacterium Thermus thermophilus

    Matvey Kolesnik et al.

    Viruses2024