LOCUS phiKo 11129 bp DNA linear UNA 28-SEP-2026 DEFINITION Thermus phage phiKo, complete genome. ACCESSION MH673671 KEYWORDS . SOURCE Thermus phage phiKo ORGANISM Thermus phage phiKo. FEATURES Location/Qualifiers source 1..11129 /country="Italy" /db_xref=2301535 /host="Thermus thermophilus HB27" /isolation_source="hot spring water" /mol_type="genomic DNA" /organism="Thermus phage phiKo" /label="source" ITR 1..16 /note="inverted terminal repeat" /label="ITR" CDS 85..618 /codon_start=1 /locus_tag="phiKo_26" /product="hypothetical protein" /protein_id="AYJ74701.1" /transl_table=11 /translation="MTALMGTRRHAYEVLRKWATDEAGDSLAEAVAAVLPWWYLDRYL DRLATDDGFREALGLAALELPGLGEVGRTEAYAAAKAILRALKDCPEDVLAWILLFGG KYLSARGDRVEVGSKIHPGFEVSLSLVGGEIATVYVVVGGALGLESGEVGGKVAHLIG AAARTVLAIALEGGREE*" /label="phiKo_26" gene 85..618 /locus_tag="phiKo_26" /label="phiKo_26" misc_feature 116..121 /Recognition_pattern="C^GTACG" /label="BsiWI, Pfl23II, PspLI" /note="Geneious type: restriction site" misc_feature 271..276 /Recognition_pattern="GAG^CTC" /label="Ecl136II, Eco53kI, EcoICRI" /note="Geneious type: restriction site" misc_feature 271..276 /Recognition_pattern="GAGCT^C" /label="SacI, Psp124BI, SstI" /note="Geneious type: restriction site" primer_bind 451..471 /Tm=59 /Description="" /label="phiKo_ORF26_qPCR_fwd" misc_feature 480..483 /Recognition_pattern="^AATT" /label="MluCI, Sse9I, TasI" /note="Geneious type: restriction site" misc_feature complement(553..570) /Tm=59 /Description="" /label="phiKo_ORF26_qPCR_rev" /note="Geneious type: primer_bind_reverse" CDS 615..902 /codon_start=1 /locus_tag="phiKo_25" /product="hypothetical protein" /protein_id="AYJ74700.1" /transl_table=11 /translation="MTYPTIYHAMRHYYLPHEVAALLRGKAEVREEEGRPVVVDSEGR VRLKAVSVLVEIQSRWGGATGLATPHWAFPMEDVEALLRALRRPAKGRKRG*" /label="phiKo_25" gene 615..902 /locus_tag="phiKo_25" /label="phiKo_25" misc_feature 663..671 /Recognition_pattern="CACNNN^GTG" /label="DraIII, AdeI" /note="Geneious type: restriction site" misc_feature 663..668 /Recognition_pattern="CACGAG(-5/-1)" /label="BauI, BssSI, Bst2BI" /note="Geneious type: restriction site" misc_feature 778..783 /Recognition_pattern="R^GATCY" /label="BstX2I, BstYI, MflI, PsuI" /note="Geneious type: restriction site" CDS 908..1102 /codon_start=1 /locus_tag="phiKo_24" /product="hypothetical protein" /protein_id="AYJ74699.1" /transl_table=11 /translation="MILEVRRIGNGRWEVAVIRPGANPTYLVVYSYQDARELAALLGE LIGEPVSVRQVREEVVGEDE*" /label="phiKo_24" gene 908..1102 /locus_tag="phiKo_24" /label="phiKo_24" CDS 1113..1496 /codon_start=1 /locus_tag="phiKo_23" /product="hypothetical protein" /protein_id="AYJ74698.1" /transl_table=11 /translation="MGQELGAVELGSGKRYLTWKEYLEKVGDPKGYTGTHAVIRIWPP AKYPSATLVFWVDDPNHPEGGYGVRKSIPPLLWSTLERAGFVPGKARKGGTLYLDFQG GTMKLILEEDSGVYAPDKSGGWELV*" /label="phiKo_23" gene 1113..1496 /locus_tag="phiKo_23" /label="phiKo_23" misc_feature 1192..1198 /Recognition_pattern="GG^GWCCC" /label="KflI" /note="Geneious type: restriction site" misc_feature 1520..1525 /Recognition_pattern="GTT^AAC" /label="HpaI, KspAI" /note="Geneious type: restriction site" CDS 1557..1775 /codon_start=1 /locus_tag="phiKo_22" /product="hypothetical protein" /protein_id="AYJ74697.1" /transl_table=11 /translation="MPEEMGDGFILVYGRGETEEARENGYLPDVDEYRATFATFHEAY MYAETIPVPTTIVYDEETDTWEVYVDYE*" /label="phiKo_22" gene 1557..1775 /locus_tag="phiKo_22" /label="phiKo_22" misc_feature 1666..1671 /Recognition_pattern="TCG^CGA" /label="NruI, Bsp68I, BtuMI, RruI" /note="Geneious type: restriction site" misc_feature 1758..1763 /Recognition_pattern="TAC^GTA" /label="SnaBI, BstSNI, Eco105I" /note="Geneious type: restriction site" CDS 1784..2731 /codon_start=1 /locus_tag="phiKo_21" /product="DNA polymerase B" /protein_id="AYJ74696.1" /transl_table=11 /translation="MSALVVEPVWDWWEKAHHYPVEDDMHRQMAEDIFLNGAPEGAQM AHVSPNLITIHYGGDRVRWERWRRLDAAGKLPSDYARAALKGAYRVWRPKWGRPEMEA MRRWGYPPIHAQPGMYEDMAYVDVRSAYGTLYTLYWGVEYWPMRWLSLPRRAIVWPEE LRANKLARNALYGLIRSEGLWAYRPGRKRLWLPNRMAYPQVALAVVDVLHTVAWRAVR DMGAVYVMIDGIILPERNVPLLMDYVASMGLEGRVDAVGPANVEGVGAYAMPGKSTRR RGNGRPFSNLKGEALGEWLEAATRRFLACRRYILGGEAL*" /label="DNAP" gene 1784..2731 /locus_tag="phiKo_21" /label="phiKo_21" misc_feature 1919..1924 /Recognition_pattern="CAC^GTG" /label="PmaCI, AcvI, BbrPI, Eco72I, PmlI, PspCI" /note="Geneious type: restriction site" misc_feature 2158..2163 /Recognition_pattern="C^GTACG" /label="BsiWI, Pfl23II, PspLI" /note="Geneious type: restriction site" misc_feature 2286..2291 /Recognition_pattern="GCAATG(2/0)" /label="BsrDI, Bse3DI, BseMI" /note="Geneious type: restriction site" primer_bind 2489..2508 /Tm=57 /Description="" /label="phiKo_ps_F" CDS 2728..3243 /codon_start=1 /locus_tag="phiKo_20" /product="lysozyme" /protein_id="AYJ74695.1" /transl_table=11 /translation="MNWIEFWRSKKPTWRHRPVDPAYIVLHHTAGPVDQAPQAIWDYH VKVRGWPHGGYHFLVYHDGTVVKMLPLSAQPICVGEYNHLAICIALVGNFVGGYPPEW NERAPGWKSLAWLVRELRKHDSGLRLRLVRHKDLRPTKCPGTVTWEEALVRGGVPQEQ VETLKVAGVIA*" /modified_by="matve" /label="endolysin" gene 2728..3243 /locus_tag="phiKo_20" /label="phiKo_20" misc_feature complement(2796..2815) /Tm=59 /Description="" /label="phiKo_ps_R" /note="Geneious type: primer_bind_reverse" misc_feature 2857..2862 /Recognition_pattern="CAC^GTG" /label="PmaCI, AcvI, BbrPI, Eco72I, PmlI, PspCI" /note="Geneious type: restriction site" primer_bind 2935..2944 /Tm=39 /Description="" /label="phiKo_M2.4_qPCR_fwd" misc_feature 2952..2957 /Recognition_pattern="CA^TATG" /label="NdeI, FauNDI" /note="Geneious type: restriction site" primer_bind 2999..3008 /Tm=36 /Description="" /label="phiKo_ORF03_qPCR_rev" misc_feature 3079..3084 /Recognition_pattern="GAG^CTC" /label="Ecl136II, Eco53kI, EcoICRI" /note="Geneious type: restriction site" misc_feature 3079..3084 /Recognition_pattern="GAGCT^C" /label="SacI, Psp124BI, SstI" /note="Geneious type: restriction site" misc_feature 3172..3184 /Recognition_pattern="(7/12)GAAGNNNNNNTAC(12/7)" /label="BarI" /note="Geneious type: restriction site" misc_feature 3191..3197 /Recognition_pattern="GG^GWCCC" /label="KflI" /note="Geneious type: restriction site" CDS 3259..3507 /codon_start=1 /locus_tag="phiKo_19" /product="head morphogenesis protein" /protein_id="AYJ74694.1" /transl_table=11 /translation="MPRELEEKAAKLREQLNRLYERSDALMAEIKRLQDEAAGKQGME RWTILRRAYKLKDEWNSVAKQIMNMGVRLARIEEALGR*" /modified_by="matve" /label="HMP" gene 3259..3507 /locus_tag="phiKo_19" /label="phiKo_19" misc_feature 3306..3318 /Recognition_pattern="(7/12)GAACNNNNNNTAC(12/7)" /label="PsrI" /note="Geneious type: restriction site" primer_bind 3333..3342 /Tm=20 /Description="" /label="IC_spacer_2.4" CDS 3510..3731 /codon_start=1 /locus_tag="phiKo_18" /product="hypothetical protein" /protein_id="AYJ74693.1" /transl_table=11 /translation="MEELCLIAGPVASLVVQALKRFPVVQRYPKVVLAALTGAYVLVQ GTGWECWVAAFASGIAGYEVVIKPVAKKE*" /label="phiKo_18" gene 3510..3731 /locus_tag="phiKo_18" /label="phiKo_18" misc_feature 3533..3539 /Recognition_pattern="CG^GWCCG" /label="RsrII, CpoI, CspI, Rsr2I" /note="Geneious type: restriction site" misc_feature 3669..3674 /Recognition_pattern="GAATGC(1/-1)" /label="BsmI, Mva1269I, PctI" /note="Geneious type: restriction site" misc_feature 3733..3738 /Recognition_pattern="GCAATG(2/0)" /label="BsrDI, Bse3DI, BseMI" /note="Geneious type: restriction site" CDS 3736..3921 /codon_start=1 /locus_tag="phiKo_17" /product="ribonuclease Z" /protein_id="AYJ74692.1" /transl_table=11 /translation="MDWVQAIRDIGFPIVVSLLLLLKLDASLNRLREAVEENTRILRV GFRVMNGHKEEDVHGKR*" /modified_by="matve" /label="RNase Z" gene 3736..3921 /locus_tag="phiKo_17" /label="phiKo_17" misc_feature 3799..3804 /Recognition_pattern="C^TTAAG" /label="AflII, BfrI, BspTI, BstAFI, MspCI, Vha464I" /note="Geneious type: restriction site" misc_feature 3802..3807 /Recognition_pattern="A^AGCTT" /label="HindIII" /note="Geneious type: restriction site" CDS 3925..4770 /codon_start=1 /locus_tag="phiKo_14_17" /product="hypothetical protein" /transl_table=11 /translation="MGSPEADKERLGSLTAEPGGEGGGGPRGGAGSGGGGGGSRGGGG GSRGGSGGGGRSARRGRGGSGSGSGGRSGGGGEGGLGPAVPDSGGSASAGARELGEDA AAEALPSPTPRPVAPPRASDAAALGALGEMLLKAIMGGLSLVLGPHWAVSDEEAKAWG KALEDWAKAQPPKRRKALSKALGAVPTVNLIGTTALIVAPRVQATLQMRAAKKEAEDG RKGRAGSGVPGTLGADSPGSPEKPYGYDFAGAVKRLSEQDAGGAGSGDSGGNGGVRGA PKARA*" /label="phiKo_14_17" gene 3925..4770 /locus_tag="phiko_14_17" /label="phiko_14_17" misc_feature 3971..3979 /Recognition_pattern="CAGNNN^CTG" /label="AlwNI, CaiI, PstNI" /note="Geneious type: restriction site" misc_feature 4166..4176 /Recognition_pattern="GACNNN^NNGTC" /label="Eam1105I, AhdI, BmeRI, DriI" /note="Geneious type: restriction site" misc_feature 4183..4188 /Recognition_pattern="T^CCGGA" /label="AccIII, Aor13HI, BseAI, Bsp13I, BspEI, Kpn2I, MroI" /note="Geneious type: restriction site" misc_feature complement(4397..4434) /Tm=74 /Description="" /label="Ko_M16.2" /note="Geneious type: primer_bind_reverse" misc_feature complement(4530..4547) /Tm=60 /Description="" /label="phiKo_M2.4_qPCR_rev" /note="Geneious type: primer_bind_reverse" CDS 4776..5387 /codon_start=1 /locus_tag="phiKo_14" /product="DNA packaging ATPase" /protein_id="AYJ74689.1" /transl_table=11 /translation="MDWRRIGHSDRVAVVGTTGAGKSTLLRAMMASRPWVLLYDPKGE WEGEEWLTVREAAKLPRKPHPRVRYFPLPDELRDKEALDDFFWWAYYAKNLTVVVDEA YLATLAGAWLPPGYQACLAQGRSRGVAVWTATQRPYKIPQTILSEAEHWFVFRLNAPQ DRWAVHQWTGLDSRLISPENLPKRVWYYVSEGQVYGPYMLRLE*" /modified_by="matve" /label="DNA packaging ATPase" gene 4776..5387 /locus_tag="phiKo_14" /label="phiKo_14" misc_feature 5268..5273 /Recognition_pattern="G^TGCAC" /label="ApaLI, Alw44I, VneI" /note="Geneious type: restriction site" CDS 5401..6426 /codon_start=1 /locus_tag="phiKo_13" /product="putative major capsid protein" /protein_id="AYJ74688.1" /transl_table=11 /translation="MAGNAQQASGGGTIPFRYGSRMRIQRVGFIPFQENTQAPPLELP RVGFLAAVVLEWRGAISGTGVSVGPRGPWALVRRLRLGLNLGAVNIYDTSGYGNYLIN LLNGRDFTKHPLYDSTSRWHYHIPVAVNLGENATTGLVLLQDPEVRATVEVTWGALAD AFNGTGLSVDSGAGLDVYYVYFEVPDLRKVSAPPLVLHRVLEDTQPITQTGDNAYLVP RQGILLQLAHTLTLNGAFSNAWDRAFVRLNRTDTIMEVIPGVHYALDLQGRNAQTSPI TPTHVIFHDLFRAMGALDRGDLRDALDTEAVTTTESVVTVSQSATLGANNNFLGAIRR IIQPIRV*" /modified_by="matve" /label="MCP" gene 5401..6426 /locus_tag="phiKo_13" /label="phiKo_13" misc_feature 5463..5472 /Recognition_pattern="GATNN^NNATC" /label="BsaBI, Bse8I, BseJI" /note="Geneious type: restriction site" misc_feature 5605..5612 /Recognition_pattern="CC^TCGAGG" /label="AbsI" /note="Geneious type: restriction site" misc_feature 5605..5612 /Recognition_pattern="VC^TCGAGB" /label="PspXI" /note="Geneious type: restriction site" misc_feature 5606..5611 /Recognition_pattern="C^TCGAG" /label="XhoI, PaeR7I, Sfr274I, SlaI" /note="Geneious type: restriction site" misc_feature 5607..5610 /Recognition_pattern="T^CGA" /label="TaqI" /note="Geneious type: restriction site" misc_feature 5627..5632 /Recognition_pattern="TGC^GCA" /label="Acc16I, FspI, NsbI" /note="Geneious type: restriction site" misc_feature 5746..5756 /Recognition_pattern="GACNNN^NNGTC" /label="Eam1105I, AhdI, BmeRI, DriI" /note="Geneious type: restriction site" misc_feature 6371..6384 /Recognition_pattern="(7/12)GAANNNNNNNTTGG(11/6)" /label="AjuI" /note="Geneious type: restriction site" CDS 6440..6814 /codon_start=1 /locus_tag="phiKo_12" /product="hypothetical protein" /protein_id="AYJ74687.1" /transl_table=11 /translation="MLSDYVALNNVLPSVGGWSLGEQATAGLQDATQPATTASGKTPT GQGALLEGQSPLVTFLVVLGFLLLLMWLAHTYGEPGEYSNLKASAYNVLFIGLTAALF IPLLKVAAVKIPGPWTSYFLSI*" /label="phiKo_12" gene 6440..6814 /locus_tag="phiKo_12" /label="phiKo_12" misc_feature 6467..6472 /Recognition_pattern="AA^CGTT" /label="AclI, Psp1406I" /note="Geneious type: restriction site" CDS 6823..6996 /codon_start=1 /locus_tag="phiKo_11" /product="hypothetical protein" /protein_id="AYJ74686.1" /transl_table=11 /translation="MWEYLQAKAQEWLGRTGLTFQVVLVLVLLYLGYRAGTPWLIAAI LVSMVVLAGGGGE*" /label="phiKo_11" gene 6823..6996 /locus_tag="phiKo_11" /label="phiKo_11" misc_feature 6834..6841 /Recognition_pattern="CCTGCA^GG" /label="Sse8387I, SbfI, SdaI" /note="Geneious type: restriction site" CDS 6983..7123 /codon_start=1 /locus_tag="phiKo_10" /product="hypothetical protein" /protein_id="AYJ74685.1" /transl_table=11 /translation="VAVSRLGWAIIAAVVLALTATYFRPLWIVVGLVILIFLLNAVGG GR*" /label="phiKo_10" gene 6983..7123 /locus_tag="phiKo_10" /label="phiKo_10" CDS 7125..7277 /codon_start=1 /locus_tag="phiKo_09" /product="hypothetical protein" /protein_id="AYJ74684.1" /transl_table=11 /translation="MDTVEKIALTALAIVAVIVVLQRGTAAAQVVNAIGSTYTNLVKT LVSAPK*" /label="phiKo_09" gene 7125..7277 /locus_tag="phiKo_09" /label="phiKo_09" CDS 7288..7602 /codon_start=1 /locus_tag="phiKo_08" /product="hypothetical protein" /protein_id="AYJ74683.1" /transl_table=11 /translation="MCNREVALPRSRYAQALRDEAGLPTRPYDYYSRPSMYPGPVGPV PAPPTIPVPTPIGILPGYRGELSALKYQGVVPREHPAGPYAPEGGYITWADVVKRRGD GG*" /label="phiKo_08" gene 7288..7602 /locus_tag="phiKo_08" /label="phiKo_08" misc_feature 7359..7364 /Recognition_pattern="CACGAG(-5/-1)" /label="BauI, BssSI, Bst2BI" /note="Geneious type: restriction site" CDS 7592..8071 /codon_start=1 /locus_tag="phiKo_07" /product="peptidase" /protein_id="AYJ74682.1" /transl_table=11 /translation="MEVKDYLPFAVVGGGALLAYLLLKPQPYTVVNPPTPQGPSEDAR LNAVVALTQLAVERERARWEYAATVEAAKAQAEYELRARQIEAEQEARRIQAEKEVQQ KAADAQFWGTFWSGLFGIIGSGLALFAGLSDEALYNRLPYPPYIGHGGQLAALSRRR* " /modified_by="matve" /label="peptidase" gene 7592..8071 /locus_tag="phiKo_07" /label="phiKo_07" misc_feature 7754..7759 /Recognition_pattern="GCAGTG(2/0)" /label="BtsI" /note="Geneious type: restriction site" misc_feature 7924..7929 /Recognition_pattern="AA^CGTT" /label="AclI, Psp1406I" /note="Geneious type: restriction site" CDS 8074..8547 /codon_start=1 /locus_tag="phiKo_06_7" /product="hypothetical protein" /transl_table=11 /translation="MGIAIEPIDSGPCVDSDCYYARGERLTWWEAPPPPPPSNPALDP PPPPPPQREERPRIDPPPTLFDQPSYSAEPPPSPPPSTPSPPVDPEPPPDPLPPVTSD DPLYSVIGELLGGREPTAQPEPIVLAPPPSNPSLALWIMALAVVGVLGYAWLQRR*" /label="phiKo_06_7" gene 8074..8547 /locus_tag="phiKo_06_7" /label="phiKo_06_7" misc_feature 8098..8107 /Recognition_pattern="GACNN^NNGTC" /label="PshAI, BoxI, BstPAI" /note="Geneious type: restriction site" misc_feature 8152..8158 /Recognition_pattern="A^CCWGGT" /label="SexAI, CsiI, MabI" /note="Geneious type: restriction site" misc_feature 8258..8269 /Recognition_pattern="(11/13)CAANNNNNGTGG(12/10)" /label="CspCI" /note="Geneious type: restriction site" CDS 8550..8801 /codon_start=1 /locus_tag="phiKo_06" /product="hypothetical protein" /protein_id="AYJ74681.1" /transl_table=11 /translation="MDWGKLIGFRRYQRQNPDAYVAPTSPLPEWPPLPQTGTFAHWGD DVLANLSGGAARAMWDWPARYATVEAFTPPEVVLRWPTP*" /label="phiKo_06" gene 8550..8801 /locus_tag="phiKo_06" /label="phiKo_06" misc_feature 8689..8694 /Recognition_pattern="TGG^CCA" /label="BalI, MlsI, MluNI, Mox20I, MscI, Msp20I" /note="Geneious type: restriction site" CDS 8786..9343 /codon_start=1 /locus_tag="phiKo_05" /product="hypothetical protein" /protein_id="AYJ74680.1" /transl_table=11 /translation="VAYALDVYQLLRDCTGRDDLARLGTAIFLHEKGPQGYEAGYGYT DSGPLPEWRGFQKQIQGVCSELTRFFQGRPVNAYTVREFWREEWRASDIGWPQKVWAW YLRLAGAPTDKLAQMPIGRGEASRPSPLLPRIPTVEDKLQGSLSPRVQEVLEQRTPEA VRKALLIGLGAIGLAVVWYEVGRRV*" /label="phiKo_05" gene 8786..9343 /locus_tag="phiKo_05" /label="phiKo_05" misc_feature 9059..9064 /Recognition_pattern="GAT^ATC" /label="EcoRV, Eco32I" /note="Geneious type: restriction site" CDS 9340..9771 /codon_start=1 /locus_tag="phiKo_04" /product="hypothetical protein" /protein_id="AYJ74679.1" /transl_table=11 /translation="MSLTPQGVSGNSVGGDSSSSAWPSTLVAPGTIYHLGRWTGQTLR KLILSTATDSIVYGRVQIALDYPRGGLHPGNNALPNALVDLPLNFSPQHPIISLDFTP GLVTVLPGESIYLIVYDFMSTTSAAITWGLNMFWEPLGGER*" /label="phiKo_04" gene 9340..9771 /locus_tag="phiKo_04" /label="phiKo_04" misc_feature 9389..9395 /Recognition_pattern="GCTCTTC(1/4)" /label="SapI, BspQI, LguI, PciSI" /note="Geneious type: restriction site" misc_feature 9627..9632 /Recognition_pattern="A^AGCTT" /label="HindIII" /note="Geneious type: restriction site" misc_feature 9648..9653 /Recognition_pattern="A^CTAGT" /label="SpeI, AhlI, BcuI" /note="Geneious type: restriction site" misc_feature 9698..9703 /Recognition_pattern="T^CATGA" /label="BspHI, CciI, PagI" /note="Geneious type: restriction site" misc_feature 9713..9718 /Recognition_pattern="CCGC^GG" /label="SacII, Cfr42I, KspI, Sfr303I, SgrBI" /note="Geneious type: restriction site" CDS 9768..10577 /codon_start=1 /locus_tag="phiKo_03" /product="tail protein" /protein_id="AYJ74678.1" /transl_table=11 /translation="MSLEIFPTYPEIRTEQLSAVEWDKLPNLSTLVISVIRNAPTITP SPGDWLLGVLAGGTEVGKLPIGQADGVPLLNASGALASADAYLSRGSVTSAVDWNTLT NAGTYEIASGAFGTGSANTPPAVTQQGHLLVLKTSGATTQVYVPKSADPGIYWRQYAG GTWSSWATAGVMYGSNSNGSYIRFADGTQICWREATWEMPTGWSTGPSVPWPAAFVAT PRVWLNYTRSGWRIILSDITNNSTTIQLSAYNFDTTVTPYRVDILAIGRWK*" /label="phiKo_03" gene 9768..10577 /locus_tag="phiKo_03" /label="phiKo_03" primer_bind 9847..9866 /Tm=59 /Description="" /label="phiKo_ORF03_qPCR_fwd" misc_feature 9907..9917 /Recognition_pattern="(8/13)GAGNNNNNCTC(13/8)" /label="BplI" /note="Geneious type: restriction site" misc_feature 9936..9946 /Recognition_pattern="(10/15)ACNNNNGTAYC(12/7)" /label="BaeI" /note="Geneious type: restriction site" misc_feature 9971..9975 /Recognition_pattern="CGWCG^" /label="Hpy99I" /note="Geneious type: restriction site" misc_feature 10006..10011 /Recognition_pattern="TCG^CGA" /label="NruI, Bsp68I, BtuMI, RruI" /note="Geneious type: restriction site" misc_feature 10016..10020 /Recognition_pattern="CGWCG^" /label="Hpy99I" /note="Geneious type: restriction site" misc_feature 10084..10089 /Recognition_pattern="CA^TATG" /label="NdeI, FauNDI" /note="Geneious type: restriction site" misc_feature 10113..10118 /Recognition_pattern="A^CCGGT" /label="AgeI, AsiGI, BshTI, CspAI, PinAI" /note="Geneious type: restriction site" misc_feature 10155..10161 /Recognition_pattern="CACCTGC(4/8)" /label="AarI, PaqCI" /note="Geneious type: restriction site" misc_feature 10187..10196 /Recognition_pattern="CACNN^NNGTG" /label="OliI, AleI" /note="Geneious type: restriction site" misc_feature 10187..10196 /Recognition_pattern="CAYNN^NNRTG" /label="MslI, RseI, SmiMI" /note="Geneious type: restriction site" misc_feature 10251..10257 /Recognition_pattern="A^CCWGGT" /label="SexAI, CsiI, MabI" /note="Geneious type: restriction site" misc_feature 10270..10275 /Recognition_pattern="C^GGCCG" /label="BseX3I, BstZI, EagI, EclXI, Eco52I" /note="Geneious type: restriction site" misc_feature 10377..10382 /Recognition_pattern="W^GTACW" /label="TatI" /note="Geneious type: restriction site" misc_feature 10414..10419 /Recognition_pattern="TGG^CCA" /label="BalI, MlsI, MluNI, Mox20I, MscI, Msp20I" /note="Geneious type: restriction site" misc_feature 10488..10493 /Recognition_pattern="AGT^ACT" /label="ScaI, BmcAI, ZrmI" /note="Geneious type: restriction site" misc_feature 10488..10493 /Recognition_pattern="W^GTACW" /label="TatI" /note="Geneious type: restriction site" misc_feature 10500..10505 /Recognition_pattern="C^AATTG" /label="MfeI, MunI" /note="Geneious type: restriction site" misc_feature 10501..10504 /Recognition_pattern="^AATT" /label="MluCI, Sse9I, TasI" /note="Geneious type: restriction site" CDS 10574..10867 /codon_start=1 /locus_tag="phiKo_02" /product="hypothetical protein" /protein_id="AYJ74677.1" /transl_table=11 /translation="VIRIHYVPQVGLPGKRLVYSWSGRVLTVRLEPDGVEDVYDLSVL GPGDEVVGVETETLPFTPILSARLEIDGDLHVTLLHWYEGGEEPELAEEVLDG*" /label="phiKo_02" gene 10574..10867 /locus_tag="phiKo_02" /label="phiKo_02" misc_feature 10739..10744 /Recognition_pattern="GGTCTC(1/5)" /label="Eco31I, BsaI, Bso31I, BspTNI" /note="Geneious type: restriction site" CDS 10860..11111 /codon_start=1 /locus_tag="phiKo_01" /product="hypothetical protein" /protein_id="AYJ74676.1" /transl_table=11 /translation="MARLKIKTHQDRIREAWAALRAERDRRLAETDWVVARAYERGEP VPEAWAAYRQALRDLPALVGEEDLLAGRIPWPEPPGGAS*" /label="phiKo_01" gene 10860..11111 /locus_tag="phiKo_01" /label="phiKo_01" misc_feature 10965..10972 /Recognition_pattern="GCCC^GGGC" /label="SrfI" /note="Geneious type: restriction site" ITR complement(11114..11129) /note="inverted terminal repeat
" /label="ITR" ORIGIN 1 cagggttggg gggagtatat actttgggca tgggggttgc gtatcgtatg cccgtgtgat 61 attgtgttct cggaggtgag cgcgatgacg gctctcatgg gcacccgcag gcacgcgtac 121 gaggtactga ggaagtgggc cacggatgag gccggggact ccttggccga ggcggtggcg 181 gcggtactcc cctggtggta cttggaccgc tacctggacc gccttgctac tgatgacggc 241 ttccgggagg ccttgggcct cgcggccctt gagctccccg gtctggggga ggttggccgt 301 accgaggcct acgccgccgc caaagccatc cttagggcgc taaaagattg ccccgaagat 361 gtcttggcgt ggatactact ctttggcgga aagtacctga gcgcgcgtgg agatcgcgtg 421 gaagttggta gcaaaatcca ccctgggttt gaagtgtctc tgtccctggt gggcggggaa 481 attgccacag tctatgtcgt ggttggcggg gcgctcgggc ttgagtcggg ggaagtgggg 541 gggaaggtgg cccatcttat tggcgcggcg gctcgcacgg tgctcgccat cgccctggag 601 ggagggaggg aggaatgacc taccccacca tctaccacgc tatgcgccac tactatctcc 661 cccacgaggt ggccgccctc ctccggggca aggcggaggt gcgggaggag gaggggcggc 721 ccgtagtggt ggactccgag gggagggtgc ggctcaaggc ggtgagcgtc ctggtggaga 781 tccagagccg ttgggggggc gctactggcc tcgctacccc tcattgggct tttcccatgg 841 aagacgtgga ggctctcttg cgggcgctta ggaggcctgc taagggaagg aaaagggggt 901 gattaggatg attttggaag tgcggcgtat aggtaatggg cgctgggaag tggccgtcat 961 tcgccccggg gcgaacccca cgtatctggt ggtctactcc taccaggacg ctcgggaact 1021 cgcggcgctc ctcggggagc tgattgggga gcccgtgagc gtgcggcagg ttagggaaga 1081 ggttgtagga gaagacgagt aggaggtgag ccatgggaca ggaactcggt gcggtggaac 1141 tcggtagcgg caagaggtac ctgacgtgga aggagtacct ggagaaggtg ggggacccca 1201 agggctacac gggcacccac gcggtcatcc gcatttggcc ccccgccaag tacccctcgg 1261 ccaccctggt cttttgggtg gacgacccca atcaccctga agggggttac ggcgtgagga 1321 agtccattcc ccctctgctt tggtccaccc tggagagggc ggggtttgtt ccggggaagg 1381 ctcggaaggg cggcacgctc tacctggact tccagggggg caccatgaaa ctcatcctgg 1441 aggaagatag cggggtttac gcccccgaca agtcgggagg ctgggagctg gtgtaagggg 1501 taaactaggg gggagagggg ttaaccttct cccccttgcc tttgaggagg tgagtcatgc 1561 ccgaggaaat gggagacggc ttcattttgg tctacggcag gggggaaact gaggaggccc 1621 gggagaacgg ctatcttccc gatgtggacg agtaccgggc cacattcgcg actttccacg 1681 aagcgtacat gtacgcagaa actatcccgg taccaacaac aatcgtctac gatgaggaaa 1741 cggacacctg ggaagtctac gtagactacg agtaggagga gagatgagcg cccttgtggt 1801 ggaacccgtg tgggactggt gggagaaagc ccaccactac ccggtagaag acgacatgca 1861 caggcaaatg gctgaggaca ttttccttaa cggggccccc gagggcgctc agatggccca 1921 cgtgagcccc aacctcatca caatccatta tgggggggac cgggtgcggt gggagcgctg 1981 gcggcgcttg gacgcggcag ggaaactccc atccgattac gctcgggcgg ccctaaaggg 2041 ggcataccga gtgtggaggc ctaaatgggg gcggcccgag atggaggcca tgcggcgatg 2101 gggctacccc cccatacacg cccaaccggg catgtacgag gatatggcct atgtggacgt 2161 acggagcgcc tacggcacgc tctacacgct ctattggggc gtggagtatt ggcccatgcg 2221 gtggctctct cttccgaggc gggccatagt gtggcctgag gagttgcggg cgaataagtt 2281 ggcccgcaat gcgctttatg gactgatacg ctctgagggg ctttgggcgt ataggcctgg 2341 gcgaaaacgc ttatggttgc cgaacaggat ggcctacccc caagtggctc ttgccgtggt 2401 ggacgtgttg cacacggtag cgtggagggc ggtgcgggac atgggggcgg tctacgtgat 2461 gattgacggg attatcttgc cggagcgcaa cgtacccctc ctcatggact acgtggcttc 2521 catggggctt gaggggcgcg tggacgcggt gggcccggcc aacgtggagg gcgtaggagc 2581 ctacgctatg ccggggaaat ctacgaggag gcgcggtaac ggtcgccctt tttccaatct 2641 gaagggggag gcccttgggg aatggcttga ggcggcaaca cggcggtttt tggcgtgtag 2701 gcggtatata ctgggagggg aggcgctatg aactggattg agttttggcg gtctaagaag 2761 cccacttgga ggcataggcc tgttgacccc gcctatattg tcctgcacca cacggcgggg 2821 cccgtggacc aagctcctca ggctatttgg gactatcacg tgaaggtaag agggtggccc 2881 cacgggggct accacttcct ggtctaccac gatgggaccg tggtgaagat gttgccccta 2941 agcgcccaac ccatatgcgt aggggaatac aatcacctag ccatttgcat cgcgctggtg 3001 ggcaactttg tgggcggcta ccctcctgag tggaacgagc gggcccccgg atggaagtct 3061 ttggcgtggc ttgtgcggga gctcaggaag cacgacagcg gattgcggtt gaggttagtg 3121 cggcacaaag accttaggcc aacgaagtgc cctggaacag ttacgtggga ggaagcccta 3181 gtacgggggg gggtccccca agaacaggtg gagacgctga aagtggcggg cgtgatagca 3241 taaggaaagg agggacgtat gccgcgtgaa ctggaggaaa aggcggccaa actgcgggaa 3301 cagttgaaca ggctctacga gcgttccgat gcactcatgg ctgagattaa gcgcctacag 3361 gatgaggcgg cagggaagca gggcatggag cggtggacca tcttgcggcg ggcgtacaag 3421 ctcaaggacg agtggaacag cgttgcaaag cagattatga acatgggggt taggctagcc 3481 cgcattgagg aggcgttggg gaggtgagca tggaggaact ttgccttatt gccggtccgg 3541 ttgctagttt ggtcgtccag gccttgaaga ggttcccggt ggtacagcgt taccctaaag 3601 tggtcctcgc cgctttaact ggggcttacg tcctggttca gggtacgggc tgggagtgct 3661 gggtggcggc attcgcttcg ggcatagctg gatatgaagt tgtgattaag cccgtggcga 3721 agaaagagta gggcaatgga ctgggtgcaa gccattaggg acataggctt ccccatcgtg 3781 gtatctctac tcctcctgct taagcttgac gctagcctaa acaggcttag ggaggcagta 3841 gaggagaaca cccgcatatt gcgggtaggg tttcgcgtga tgaacgggca caaggaggag 3901 gatgtccatg gaaagaggtg aggtatggga agccctgaag cggataagga acgacttgga 3961 agccttactg cagaacctgg aggagaaggc ggaggcggtc cccgaggagg cgcaggaagc 4021 ggtggaggag gtggcggaag ccgtggagga ggtggcggaa gccgtggagg aagcggtggg 4081 ggaggccgtt cagcccgtag aggaaggggc ggaagcggta gcggaagcgg tggaagaagc 4141 ggtggtggag gtgagggagg ccttggaccc gccgtccccg actccggagg aagtgcctcc 4201 gccggagccc gtgaacttgg agaagacgcg gcggcagaag ccctacctag cccgactcct 4261 cggcctgtag ctcctccaag ggcttccgat gcggcggccc tcggagccct cggggaaatg 4321 ttgctgaagg ccatcatggg gggcttgagt ctggtcctag gcccccattg ggcggtatcg 4381 gacgaggagg ctaaagcgtg gggcaaggcc ctggaggatt gggctaaagc tcaaccccct 4441 aagcggcgta aagccttgag taaagcgctt ggggcggtgc ctacggtgaa cctcatcggc 4501 actacggccc tcatcgtggc ccctagggtg caagcgaccc tgcagatgcg ggccgcgaaa 4561 aaggaggcgg aagatgggcg taaaggcaga gctggtagcg gtgttccagg aactcttggc 4621 gcggatagcc ccggaagccc ggaaaaaccc tatggctatg attttgctgg agcagttaag 4681 cggctatctg aacaggatgc cggaggcgca ggctcgggag atagcggcgg taatggtggg 4741 gtacggggag cgcctaaggc gcgcgcttga tgctaatgga ctggaggcgg atagggcata 4801 gcgatagggt tgccgtggtg ggcaccacgg gggcggggaa gtccactctc cttagggcga 4861 tgatggcttc ccgcccttgg gtgctcctct acgatcctaa gggggaatgg gagggggaag 4921 aatggctcac cgtgcgggag gccgctaaac tcccccgcaa gccccacccc cgggtgcgct 4981 acttccccct ccccgatgag cttagggaca aagaagccct tgacgacttc ttttggtggg 5041 cctactacgc taagaacctg acggtcgttg tggacgaggc ttatctagct actctcgcgg 5101 gcgcgtggct tccacccggc taccaggcat gtctggcaca agggagaagc cgaggggtgg 5161 ccgtgtggac ggccacgcaa cgcccctaca aaatcccgca gactatcctc tcggaggcag 5221 agcattggtt tgtcttccgg ctcaatgccc cccaggacag atgggcggtg caccaatgga 5281 cgggattgga ctctaggctt atcagcccgg aaaacctccc caagcgggtg tggtattatg 5341 tgagtgaagg gcaagtctat ggcccttaca tgttgaggtt agaatgagga ggtagaggat 5401 atggctggaa acgctcagca ggctagcggc ggcggcacca tccccttcag gtacggtagc 5461 cggatgcgta tccagagggt gggcttcatc ccgttccagg agaacactca agcccctcct 5521 ctggagctac cgcgtgtagg ctttttggcg gcggtggtgt tggagtggcg tggggcgatt 5581 agtggaactg gtgtttccgt ggggcctcga ggcccgtggg cgctggtgcg caggctccgc 5641 cttgggctca acctcggggc ggtcaacatc tacgacacgt ccgggtacgg caactacctt 5701 atcaacctgc tcaatgggcg ggacttcact aagcaccccc tttatgactc cacgtcccgg 5761 tggcactacc acatccccgt agcggtcaac ctcggggaga acgccactac cgggttagtg 5821 ctcctccaag accccgaggt gcgggccacg gtggaagtta cgtggggggc cctcgctgac 5881 gcttttaacg gcacggggct ttccgtggat tccggcgcgg gccttgacgt ttactatgtc 5941 tactttgagg tgccggacct caggaaggta agcgcccccc ctctggtcct ccaccgcgtc 6001 ttggaggaca cccagcccat cacccaaacg ggggacaacg cttatctggt cccgaggcag 6061 ggcatccttc ttcagctcgc ccacacgctc accctcaacg gggccttctc caacgcgtgg 6121 gatcgggctt tcgtccgcct taaccgcacc gataccatca tggaggttat ccccggcgtt 6181 cattacgccc tggacctcca ggggcgcaac gctcaaacct ctcccatcac tccaactcac 6241 gtcatcttcc acgacctctt ccgggctatg ggggcgctgg accgggggga cctccgggat 6301 gccttggaca cggaggccgt tacaactacc gagagcgtgg taacggtcag ccaaagcgcc 6361 accctggggg ccaacaacaa cttcttgggg gccattcggc gcatcattca accgattagg 6421 gtttagtggg aggtaggaga tgctgagcga ttacgttgcc ctcaataacg ttctcccctc 6481 cgttggaggg tggagcttgg gggagcaggc cacggcggga ctgcaggacg ctacgcaacc 6541 cgccaccacc gctagcggga agacccccac ggggcagggg gccctcctgg aaggacaaag 6601 ccccctggtt actttcctgg tggtccttgg cttcctgctc ctcctcatgt ggttggctca 6661 cacctacggg gagccggggg aatactccaa cctcaaggcg agtgcctaca acgtgctgtt 6721 catcgggctt acggcggctc tgttcatccc cctcctcaag gtggcggcgg tcaagattcc 6781 cggcccgtgg actagctact tcctgagcat ttaggggggg gcatgtggga gtacctgcag 6841 gctaaggccc aggagtggct ggggagaacc gggttgacct tccaggtcgt cctggtcctg 6901 gtgctcctct acttgggcta ccgtgcaggt accccgtggc ttatcgcggc tatcctggtg 6961 agcatggtgg tcttggcggg gggtggcggt gagtaggctc gggtgggcga ttatcgcggc 7021 ggtggtgctc gccctcaccg ccacctactt ccgccctctc tggatagtcg tggggctagt 7081 cattttgatt ttcctgctga acgcagtagg aggagggagg tagcatggac accgtggaaa 7141 agattgcact cacggccttg gcgattgtag ccgtcattgt cgtcctgcag aggggcacgg 7201 cggcggcgca agtggtgaac gccatcggga gcacgtacac caacttggta aagacgctgg 7261 tgagcgcgcc caagtagggg gggagccatg tgcaatcgtg aggtggccct tccccgtagc 7321 cgctacgccc aggctctccg ggatgaggca gggcttccca cgaggcctta cgactactac 7381 tcccgcccgt ccatgtaccc tggtcccgtg gggcccgtcc ccgccccccc cactatcccg 7441 gtgcctaccc ctatcggcat cttgcctggg tacaggggag aacttagcgc cctcaagtat 7501 cagggggtag tgcctaggga gcacccggca gggccctacg cgcccgaagg tgggtacatc 7561 acatgggcgg atgtggtgaa gaggaggggc gatggaggtt aaggactacc ttccttttgc 7621 cgttgtggga gggggggccc ttcttgccta cctgctcctc aagccccagc cctacacggt 7681 agtcaatccc cctactcctc aagggcctag cgaggatgcg aggctcaacg ctgtcgtggc 7741 tttgactcag ctcgcagtgg aaagggaaag ggcccggtgg gagtacgccg ccacggtgga 7801 ggccgctaaa gcccaagcgg agtacgagct tagggcccgt cagattgagg ctgagcaaga 7861 ggcgcggcga atccaggcag aaaaggaggt acagcagaaa gcggcagacg cgcagttttg 7921 gggaacgttc tggtccggtc tttttggaat aatcgggagc gggctggccc ttttcgcggg 7981 gctttccgat gaagccctct acaaccgcct tccttatccg ccctacatcg ggcacggcgg 8041 gcaactcgcg gccctctccc ggaggaggtg agcatgggga ttgcgattga gcctattgac 8101 tccggtccat gcgtggactc ggactgctac tatgcgcggg gggagagatt gacctggtgg 8161 gaggcccctc ctccccctcc tccttccaat cccgcgcttg accccccccc tcctcctcct 8221 cctcagcggg aggagcgccc tcggatagac cctcccccca cgctttttga ccagccctca 8281 tactctgcag aacccccccc ctcccctcct ccttctacgc caagccctcc ggtggacccc 8341 gagccccctc ccgacccctt gcctccagta acctcggacg acccgcttta ttcggtaatc 8401 ggggaactcc tggggggcag ggagcctacc gcgcaaccag agcccatagt gctcgcccct 8461 cccccctcta atccgtcttt ggctctttgg attatggccc ttgcggtggt gggagtgttg 8521 gggtacgcgt ggcttcagag gaggtgaaca tggactgggg caaactcatt ggcttccggc 8581 ggtaccagag gcagaaccct gatgcgtatg tggcccccac atcccccctc ccggagtggc 8641 cccctcttcc ccagaccggg actttcgccc attgggggga tgacgttctg gccaatctct 8701 ccggcggtgc ggctcgggcc atgtgggatt ggcccgcgag atacgccacg gtggaagcgt 8761 tcaccccccc ggaggtagtc ctaaggtggc ctacgcctta gatgtctacc agcttctaag 8821 ggactgcacg gggcgggacg acttggcccg ccttgggacg gccattttcc tccatgagaa 8881 gggccctcag gggtatgagg cagggtatgg ctacacggat agcggccccc tcccggagtg 8941 gcggggcttt cagaagcaaa tccaaggggt atgctctgaa cttacgcgct tcttccaggg 9001 gaggcccgtc aacgcctaca cggtgcggga gttttggcga gaggaatggc gcgcaagcga 9061 tatcgggtgg ccgcaaaagg tttgggcttg gtatttgcgt ttggcgggag cgcccaccga 9121 caagctcgcc caaatgccta tcgggagagg ggaggcctcc cgcccctccc ctctccttcc 9181 ccgtatcccc acggtggaag ataaactgca gggtagcctt tccccccgcg tacaagaggt 9241 tttggaacag cgcacccctg aggcggtgag gaaggccctt ctcatcggcc tcggggccat 9301 tggactagcc gtggtatggt atgaggtagg gaggagagta tgagtctgac accgcaagga 9361 gtaagtggaa acagtgtcgg aggggatagc tcttccagcg cgtggccctc taccctggtc 9421 gctcccggta ctatttacca ccttggacgc tggacggggc agaccctacg caagctgata 9481 ctatccaccg ccaccgattc tattgtctat gggcgcgttc agatagcctt ggactaccca 9541 cgggggggac tgcatccggg caacaacgcc cttcctaacg ccttggtaga cctcccccta 9601 aactttagcc cccaacatcc catcataagc ttggacttca caccaggact agtaactgtc 9661 ttgccggggg aaagcatcta cctcatcgtg tatgacttca tgagcacgac ttccgcggca 9721 ataacttggg ggcttaacat gttttgggag cctttgggag gtgaaagatg agcctggaga 9781 ttttcccaac ttatcccgaa atacgcacag aacagcttag cgccgtggag tgggataaac 9841 ttcccaacct gtccacgctc gtaatcagcg tgatccgcaa cgcccctacc atcacgcctt 9901 cccccggaga ctggctcctc ggggtgctgg ctggcggtac cgaggtaggc aagttgccca 9961 tcggccaagc cgacggtgta cccctactca atgccagcgg tgccctcgcg agcgccgacg 10021 cgtacctgag cagggggtct gtgaccagcg ctgtagactg gaacaccctc accaatgcgg 10081 gtacatatga gatagcgagc ggggccttcg gcaccggtag cgccaacacg ccgcccgccg 10141 tgacccagca ggggcacctg ctggttctca aaacatcggg ggccaccacc caggtgtacg 10201 tccctaaaag cgccgaccct ggcatctatt ggcggcagta cgccgggggc acctggtctt 10261 cctgggccac ggccggtgtg atgtatgggt ccaactctaa cggctcctac attcggtttg 10321 cggatggaac gcagatatgc tggcgtgaag caacttggga aatgccaacg ggatggagta 10381 caggtccctc tgtcccttgg cctgcggcgt ttgtggccac acccagggtg tggcttaact 10441 atactagatc ggggtggcgc atcatcctca gcgatattac caacaatagt actaccatcc 10501 aattgtccgc ctacaacttt gacaccacag taacgccgta cagggtggac atactagcca 10561 tcgggaggtg gaagtgattc ggattcacta cgttccgcaa gttgggctcc cgggcaagcg 10621 cctagtctac tcctggagcg gacgcgtgct cactgtgcgc ctggaacctg acggggtaga 10681 agatgtctac gatttgagcg ttctaggccc gggtgatgag gtggtagggg ttgagacgga 10741 gaccctgccc tttactccaa tcctttcggc tcgcttagag attgacgggg atttgcatgt 10801 aacgctccta cattggtacg aagggggaga ggagcccgag ctggctgagg aggtactaga 10861 tggctagact aaaaatcaaa acccaccagg accgcatccg ggaggcctgg gcggccctta 10921 gggccgagcg tgaccgccgc ctggcggaga cggactgggt ggtggcccgg gcctatgagc 10981 ggggggagcc cgtgccggag gcctgggcgg cctaccgcca ggccctccgg gacctcccgg 11041 ctctagtggg cgaagaagac cttctggcag ggcgcatccc ctggcctgag ccacctgggg 11101 gggcttcata aacactcccc ccaaccctg //