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Thermus phage phiFa

Хозяин
Thermus thermophilus HB27c
Морфотип
siphovirus
Жизненный цикл
lytic
Тип генома
dsDNA
Длина генома, п.н.
77 664
GC-состав, %
59.2
Accession
MH673672

Карта генома

phiFa77 664 п.н. · 91 открытая рамка считывания · 1 тРНК

Прямой концевой повтор — 1..6 638 · 6 638 п.н.Прямой концевой повтор — 71 022..77 659 · 6 638 п.н.hypothetical protein — 424..885 (+) · 462 п.н.hypothetical protein — 986..1 171 (+) · 186 п.н.hypothetical protein — 1 264..1 518 (+) · 255 п.н.hypothetical protein — 1 629..1 802 (+) · 174 п.н.hypothetical protein — 2 133..2 369 (+) · 237 п.н.RNA polymerase — 2 564..4 669 (+) · 2 106 п.н.hypothetical protein — 5 219..5 458 (+) · 240 п.н.hypothetical protein — 5 489..5 872 (+) · 384 п.н.hypothetical protein — 6 073..6 348 (+) · 276 п.н.hypothetical protein — 6 405..6 599 (+) · 195 п.н.hypothetical protein — 7 131..7 427 (+) · 297 п.н.hypothetical protein — 7 495..7 773 (+) · 279 п.н.hypothetical protein — 7 781..8 485 (+) · 705 п.н.hypothetical protein — 8 498..9 280 (+) · 783 п.н.AAA+ superfamily ATPase — 9 302..10 309 (+) · 1 008 п.н.hypothetical protein — 10 370..10 588 (+) · 219 п.н.ribonuclease H — 10 600..11 097 (+) · 498 п.н.hypothetical protein — 11 105..11 332 (+) · 228 п.н.hypothetical protein — 11 322..12 470 (+) · 1 149 п.н.hypothetical protein — 12 615..13 148 (+) · 534 п.н.hypothetical protein — 13 136..13 651 (+) · 516 п.н.hypothetical protein — 13 651..14 394 (+) · 744 п.н.hypothetical protein — 14 391..15 479 (+) · 1 089 п.н.hypothetical protein — 15 490..16 332 (+) · 843 п.н.hypothetical protein — 16 329..16 814 (+) · 486 п.н.hypothetical protein — 16 845..17 669 (+) · 825 п.н.hypothetical protein — 17 662..18 177 (+) · 516 п.н.recombination DNA repair protein — 18 208..18 957 (+) · 750 п.н.replicative DNA helicase — 19 029..20 189 (+) · 1 161 п.н.RecB family exonuclease — 20 143..20 976 (+) · 834 п.н.hypothetical protein — 20 978..21 460 (+) · 483 п.н.holliday junction resolvase — 21 460..21 894 (+) · 435 п.н.DNA primase small subunit — 22 222..23 235 (+) · 1 014 п.н.hypothetical protein — 23 193..23 741 (+) · 549 п.н.XerD-like integrase — 23 803..24 660 (−) · 858 п.н.hypothetical protein — 24 979..25 503 (+) · 525 п.н.deoxycytidine triphosphate deaminase — 25 439..25 972 (+) · 534 п.н.hypothetical protein — 25 975..26 289 (+) · 315 п.н.hypothetical protein — 26 361..27 014 (+) · 654 п.н.dNMP kinase — 27 017..27 532 (+) · 516 п.н.hypothetical protein — 27 532..27 807 (+) · 276 п.н.XRE family transcriptional regulator — 27 692..28 294 (+) · 603 п.н.FAD-dependent thymidylate synthase — 28 353..29 114 (+) · 762 п.н.ribonucleoside-triphosphate reductase — 29 111..31 078 (+) · 1 968 п.н.hypothetical protein — 31 118..31 294 (+) · 177 п.н.hypothetical protein — 31 281..31 916 (+) · 636 п.н.DNA polymerase I — 31 846..34 092 (+) · 2 247 п.н.hypothetical protein — 34 079..34 576 (+) · 498 п.н.hypothetical protein — 34 628..34 828 (−) · 201 п.н.hypothetical protein — 34 831..35 121 (−) · 291 п.н.hypothetical protein — 35 118..35 486 (−) · 369 п.н.muramidase — 35 486..36 025 (−) · 540 п.н.hypothetical protein — 36 009..36 209 (−) · 201 п.н.hypothetical protein — 36 187..36 555 (−) · 369 п.н.hypothetical protein — 36 634..36 879 (−) · 246 п.н.hypothetical protein — 36 891..39 416 (−) · 2 526 п.н.hypothetical protein — 39 425..40 531 (−) · 1 107 п.н.hypothetical protein — 40 541..42 376 (−) · 1 836 п.н.holin — 42 379..42 846 (−) · 468 п.н.hypothetical protein — 42 839..43 612 (−) · 774 п.н.hypothetical protein — 43 665..44 201 (−) · 537 п.н.tail fiber protein — 44 214..45 125 (−) · 912 п.н.distal tail fiber protein — 45 129..50 195 (−) · 5 067 п.н.tape tail measure protein — 50 244..58 553 (−) · 8 310 п.н.hypothetical protein — 58 555..58 737 (−) · 183 п.н.hypothetical protein — 58 764..59 129 (−) · 366 п.н.major capsid protein — 59 191..60 213 (−) · 1 023 п.н.hypothetical protein — 60 213..60 404 (−) · 192 п.н.capsid protein — 60 395..60 883 (−) · 489 п.н.hypothetical protein — 60 886..61 713 (−) · 828 п.н.capsid protein — 61 710..62 120 (−) · 411 п.н.hypothetical protein — 62 123..62 326 (−) · 204 п.н.major head protein — 62 399..63 568 (−) · 1 170 п.н.capsid protein — 63 577..64 188 (−) · 612 п.н.capsid scaffolding protein — 64 199..65 173 (−) · 975 п.н.portal protein — 65 170..66 573 (−) · 1 404 п.н.terminase large subunit — 66 582..68 000 (−) · 1 419 п.н.terminase small subunit — 68 169..68 705 (−) · 537 п.н.ParB-like nuclease/partitioning protein — 68 702..69 418 (−) · 717 п.н.hypothetical protein — 69 418..70 101 (−) · 684 п.н.hypothetical protein — 70 202..70 963 (−) · 762 п.н.hypothetical protein — 71 456..71 917 (+) · 462 п.н.hypothetical protein — 72 018..72 203 (+) · 186 п.н.hypothetical protein — 72 296..72 550 (+) · 255 п.н.hypothetical protein — 72 661..72 834 (+) · 174 п.н.hypothetical protein — 73 165..73 401 (+) · 237 п.н.RNA polymerase — 73 596..75 701 (+) · 2 106 п.н.hypothetical protein — 76 251..76 490 (+) · 240 п.н.hypothetical protein — 76 521..76 904 (+) · 384 п.н.hypothetical protein — 77 105..77 380 (+) · 276 п.н.hypothetical protein — 77 437..77 631 (+) · 195 п.н.tRNA-Lys — 24 743..24 810 (−) · 68 п.н.

Последовательности

ФайлВидВерсияРазмер
phiFa_genome.gb.gzаннотация52 KB

Описание

A siphovirus with a very long (~600 nm) tail. The genome contains two 6,638-bp direct terminal repeats (DTRs). The repeats encode early-expressed genes, including a phage double-ψ β-barrel RNA polymerase (phiFa_44). The DTRs also encode a set of small proteins that may function as anti-defense or host-takeover proteins.

The phage also produces plaques on the T. thermophilus HB8 lawn, albeit the PFU numbers are decreased by a few orders of magnitude and the plaques are extremely small.


Связанные публикации

  1. Spacer acquisition by Type III CRISPR–Cas system during bacteriophage infection of Thermus thermophilus

    Daria Artamonova et al.

    Nucleic Acids Research2020

  2. Natural diversity of CRISPR spacers of Thermus : evidence of local spacer acquisition and global spacer exchange

    Anna Lopatina et al.

    Philosophical Transactions of the Royal Society B: Biological Sciences2019